A Filter Based Feature Selection Algorithm Using Null Space of Covariance Matrix for DNA Microarray Gene Expression Data

نویسندگان

  • Alok Sharma
  • Seiya Imoto
  • Satoru Miyano
چکیده

We propose a new filter based feature selection algorithm for classification based on DNA microarray gene expression data. It utilizes null space of covariance matrix for feature selection. The algorithm can perform bulk reduction of features (genes) while maintaining the quality information in the reduced subset of features for discriminative purpose. Thus, it can be used as a pre-processing step for other feature selection algorithms. The algorithm does not assume statistical independency among the features. The algorithm shows promising classification accuracy when compared with other existing techniques on several DNA microarray gene expression datasets.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Feature Selection and Classification of Microarray Gene Expression Data of Ovarian Carcinoma Patients using Weighted Voting Support Vector Machine

We can reach by DNA microarray gene expression to such wealth of information with thousands of variables (genes). Analysis of this information can show genetic reasons of disease and tumor differences. In this study we try to reduce high-dimensional data by statistical method to select valuable genes with high impact as biomarkers and then classify ovarian tumor based on gene expression data of...

متن کامل

Gene Identification from Microarray Data for Diagnosis of Acute Myeloid and Lymphoblastic Leukemia Using a Sparse Gene Selection Method

Background: Microarray experiments can simultaneously determine the expression of thousands of genes. Identification of potential genes from microarray data for diagnosis of cancer is important. This study aimed to identify genes for the diagnosis of acute myeloid and lymphoblastic leukemia using a sparse feature selection method. Materials and Methods: In this descriptive study, the expressio...

متن کامل

SFLA Based Gene Selection Approach for Improving Cancer Classification Accuracy

 In this paper, we propose a new gene selection algorithm based on Shuffled Frog Leaping Algorithm that is called SFLA-FS. The proposed algorithm is used for improving cancer classification accuracy. Most of the biological datasets such as cancer datasets have a large number of genes and few samples. However, most of these genes are not usable in some tasks for example in cancer classification....

متن کامل

Developing a Filter-Wrapper Feature Selection Method and its Application in Dimension Reduction of Gen Expression

Nowadays, increasing the volume of data and the number of attributes in the dataset has reduced the accuracy of the learning algorithm and the computational complexity. A dimensionality reduction method is a feature selection method, which is done through filtering and wrapping. The wrapper methods are more accurate than filter ones but perform faster and have a less computational burden. With ...

متن کامل

Diagnosis of Breast Cancer Subtypes using the Selection of Effective Genes from Microarray Data

Introduction: Early diagnosis of breast cancer and the identification of effective genes are important issues in the treatment and survival of the patients. Gene expression data obtained using DNA microarray in combination with machine learning algorithms can provide new and intelligent methods for diagnosis of breast cancer. Methods: Data on the expression of 9216 genes from 84 patients across...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2012